Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6890

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15257 and 15258 are separated by 702 nucleotides15258 and 15259 are separated by 106 nucleotides mRNA_6889: 15257 - K17065 DNM1L dynamin 1-like protein, at 364,003 to 366,716 15257 mRNA_6890: 15258 - K09496 CCT4 T-complex protein 1 subunit delta, at 367,419 to 369,510 15258 mRNA_6891: 15259 - KOG2104 Nuclear transport factor 2, at 369,617 to 370,677 15259

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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367,081 - -0.8
367,085 + -0.5
367,086 + +1.4
367,208 - +0.2
367,235 - +0.5
367,236 + +1.0

Or see this region's nucleotide sequence