Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6902

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15269 and 15270 are separated by 124 nucleotides15270 and 15271 are separated by 434 nucleotides mRNA_6901: 15269 - HMMPfam-DASH complex subunit Dad2-PF08654, at 390,201 to 390,814 15269 mRNA_6902: 15270 - HMMPfam-Fungal family of unknown function (DUF1776)-PF08643,SUPERFAMILY--SSF51735, at 390,939 to 393,309 15270 mRNA_6903: 15271 - Hypothetical Protein, at 393,744 to 394,954 15271

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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390,042 - -0.7
390,132 - +0.4
390,446 - 15269 mRNA_6901 0.40 +1.5
390,898 + +3.1
391,043 + +0.8
391,048 - +2.7
391,230 - 15270 mRNA_6902 0.12 -1.5
391,309 - 15270 mRNA_6902 0.16 +1.6
391,328 - 15270 mRNA_6902 0.16 +2.0
391,484 + 15270 mRNA_6902 0.23 +1.3
391,807 + 15270 mRNA_6902 0.37 +2.2
392,931 + 15270 mRNA_6902 0.84 -0.0
393,188 - +0.8
393,402 - +0.0
393,490 + +0.2
393,510 - -1.1
393,655 - +0.4
393,811 - +0.7
393,934 + 15271 mRNA_6903 0.16 -2.4
394,192 - 15271 mRNA_6903 0.37 +1.0
394,231 - 15271 mRNA_6903 0.40 +0.0
394,278 + 15271 mRNA_6903 0.44 -0.4

Or see this region's nucleotide sequence