Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6909

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15276 and 15277 are separated by 231 nucleotides15277 and 15278 are separated by 337 nucleotides mRNA_6908: 15276 - K01907 AACS, acsA acetoacetyl-CoA synthetase, at 405,479 to 408,297 15276 mRNA_6909: 15277 - K14315 NDC1, TMEM48 nucleoporin NDC1, at 408,529 to 411,391 15277 mRNA_6910: 15278 - KOG2287 Galactosyltransferases, at 411,729 to 414,888 15278

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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407,652 + 15276 mRNA_6908 0.77 -0.5
407,803 + 15276 mRNA_6908 0.82 -0.7
408,090 + -1.2
408,206 + -0.6
408,207 - +0.1
408,217 - -0.2
408,223 + -0.6
408,361 - +1.3
408,365 - +0.1
408,366 - +0.7
408,377 - +2.5
408,412 + +0.5
408,413 - -0.8
408,417 - -0.3
408,420 + -0.6
408,420 - -0.2
408,420 - -0.6
408,421 + +0.6
408,455 - -0.0
408,468 + -0.8
408,484 + +1.2
408,489 - +2.0
408,509 - +2.8
408,835 - 15277 mRNA_6909 0.11 +1.2
409,478 + 15277 mRNA_6909 0.33 -0.5
409,730 - 15277 mRNA_6909 0.42 -1.2
409,867 - 15277 mRNA_6909 0.47 +1.3
410,031 - 15277 mRNA_6909 0.52 +1.1
410,201 - 15277 mRNA_6909 0.58 -0.2
410,890 - 15277 mRNA_6909 0.82 +0.1
411,446 - +0.7
411,468 - +0.5
411,469 + +2.8
411,481 + -0.2
411,594 - -0.0

Or see this region's nucleotide sequence