Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6920

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15287 and 15288 are separated by 584 nucleotides mRNA_6919: 15287 - K07556 ATPeAF2, ATPAF2, ATP12 ATP synthase mitochondrial F1 complex assembly factor 2, at 430,759 to 431,959 15287 mRNA_6920: 15288 - BLAST GTP binding protein 2 [Moniliophthora roreri MCA ..., at 432,544 to 434,015 15288

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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432,045 + +1.6
432,174 - +0.5
432,247 - -0.8
432,323 + +0.8
432,334 - +1.0
432,350 - -1.8
432,363 + +0.8
432,458 + -1.2
432,461 + +1.8
432,471 + +0.5
432,489 - +0.3
432,496 + +0.2
432,497 - +1.1
432,767 + 15288 mRNA_6920 0.15 -0.3
432,774 - 15288 mRNA_6920 0.16 -0.0
432,925 + 15288 mRNA_6920 0.26 +1.3
433,228 - 15288 mRNA_6920 0.46 +1.4
433,644 + 15288 mRNA_6920 0.75 +2.3
434,106 - +3.2
434,151 + +0.8
434,540 + +2.3
434,545 + -0.1
434,821 - +1.0
434,837 - +0.0
434,838 + -1.4
434,868 - +0.2
434,875 - +0.3
434,875 + +1.1

Or see this region's nucleotide sequence