Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6933

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15301 and 15302 are separated by 180 nucleotides mRNA_6933: 15301 - KOG0810 SNARE protein Syntaxin 1 and related proteins, at 467,075 to 468,286 15301 mRNA_6934: 15302 - K12871 CCDC12 coiled-coil domain-containing protein 12, at 468,467 to 469,312 15302

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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467,185 - +0.4
467,262 - 15301 mRNA_6933 0.15 -2.9
467,518 + 15301 mRNA_6933 0.37 +0.1
467,620 - 15301 mRNA_6933 0.45 +0.9
467,630 + 15301 mRNA_6933 0.46 +1.5
467,743 - 15301 mRNA_6933 0.55 -0.8
468,025 - 15301 mRNA_6933 0.78 -0.8
468,352 - +0.9
468,454 - +0.9
468,591 - 15302 mRNA_6934 0.15 +0.5
469,209 + 15302 mRNA_6934 0.88 +2.9

Or see this region's nucleotide sequence