Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6934

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15301 and 15302 are separated by 180 nucleotides15302 and 15303 are separated by 111 nucleotides mRNA_6933: 15301 - KOG0810 SNARE protein Syntaxin 1 and related proteins, at 467,075 to 468,286 15301 mRNA_6934: 15302 - K12871 CCDC12 coiled-coil domain-containing protein 12, at 468,467 to 469,312 15302 mRNA_6935: 15303 - K12830 SF3B3, SAP130, RSE1 splicing factor 3B subunit 3, at 469,424 to 473,834 15303

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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467,518 + 15301 mRNA_6933 0.37 +0.1
467,620 - 15301 mRNA_6933 0.45 +0.9
467,630 + 15301 mRNA_6933 0.46 +1.5
467,743 - 15301 mRNA_6933 0.55 -0.8
468,025 - 15301 mRNA_6933 0.78 -0.8
468,352 - +0.9
468,454 - +0.9
468,591 - 15302 mRNA_6934 0.15 +0.5
469,209 + 15302 mRNA_6934 0.88 +2.9
469,307 - +1.0
469,334 - +1.2
469,349 + +1.7
469,366 - +0.5

Or see this region's nucleotide sequence