Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6940

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15307 and 15308 are separated by 68 nucleotides15308 and 15309 are separated by 346 nucleotides mRNA_6939: 15307 - K17973 NAA25, MDM20 N-terminal acetyltransferase B complex non-catalytic subunit, at 480,977 to 484,798 15307 mRNA_6940: 15308 - KOG2816 Predicted transporter ADD1 (major facilitator superfamily), at 484,867 to 487,020 15308 mRNA_6941: 15309 - K02154 ATPeV0A, ATP6N V-type H+-transporting ATPase subunit a, at 487,367 to 491,016 15309

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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485,148 - 15308 mRNA_6940 0.13 +0.8
485,160 + 15308 mRNA_6940 0.14 +0.3
485,379 + 15308 mRNA_6940 0.24 +1.2
486,377 + 15308 mRNA_6940 0.70 +3.0
486,477 - 15308 mRNA_6940 0.75 +0.6
486,760 - 15308 mRNA_6940 0.88 +0.0
486,850 - -0.2
486,947 + -0.6
486,951 + +0.4
487,054 + +0.4
487,066 - +1.2
487,079 - -0.2
487,092 + -0.3
487,104 - +2.9
487,125 - +1.2
487,142 - +0.5
487,155 - -0.7
487,158 + +1.0
487,172 + +0.0
487,224 - -1.0
487,234 - +0.0
487,250 + +2.2
487,253 - -0.2
487,260 - +0.9
487,269 - +0.7
487,270 + +0.1
487,270 - +0.9
487,450 - +2.2

Or see this region's nucleotide sequence