Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6965

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15332 and 15333 are separated by 560 nucleotides15333 and 15334 are separated by 359 nucleotides mRNA_6964: 15332 - K18754 LIN28 protein lin-28, at 551,090 to 553,316 15332 mRNA_6965: 15333 - Hypothetical Protein, at 553,877 to 555,010 15333 mRNA_6966: 15334 - K02210 MCM7, CDC47 DNA replication licensing factor MCM7, at 555,370 to 558,100 15334

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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553,384 + -0.8
553,441 + +0.4
554,082 + 15333 mRNA_6965 0.18 +1.3
554,102 + 15333 mRNA_6965 0.20 +1.8
554,110 - 15333 mRNA_6965 0.21 -1.3
554,394 - 15333 mRNA_6965 0.46 -1.3
554,406 - 15333 mRNA_6965 0.47 +1.1
554,768 + 15333 mRNA_6965 0.79 +0.9
554,772 + 15333 mRNA_6965 0.79 +4.0
554,956 + +1.3
555,105 + -0.3
555,129 + +1.6
555,129 + +0.1
555,132 - -0.0
555,145 + +0.2
555,158 - +1.8
555,287 - -1.1
555,303 + +0.1

Or see this region's nucleotide sequence