Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6969

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15336 and 15337 are separated by 144 nucleotides mRNA_6968: 15336 - K00737 MGAT3 beta-1,4-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, at 560,422 to 561,850 15336 mRNA_6969: 15337 - K17261 CAP1_2, SRV2 adenylyl cyclase-associated protein, at 561,995 to 564,059 15337

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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561,034 + 15336 mRNA_6968 0.43 +3.9
561,068 + 15336 mRNA_6968 0.45 +1.2
561,206 - 15336 mRNA_6968 0.55 +0.5
561,381 - 15336 mRNA_6968 0.67 -1.1
561,846 - -1.6
563,669 + 15337 mRNA_6969 0.81 +0.8
563,813 - 15337 mRNA_6969 0.88 +0.1
564,098 + +0.9
564,125 + +0.6
564,131 + -0.6
564,306 + +0.5
564,320 + -0.3
564,385 - +2.3
564,439 - +1.6
564,860 + -0.7

Or see this region's nucleotide sequence