Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6982

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15349 and 15350 are separated by 527 nucleotides15350 and 15351 are separated by 399 nucleotides mRNA_6981: 15349 - KOG0613 Projectin/twitchin and related proteins, at 590,905 to 593,177 15349 mRNA_6982: 15350 - K11497 CENPC centromere protein C, at 593,705 to 596,436 15350 mRNA_6983: 15351 - K02145 ATPeV1A, ATP6A V-type H+-transporting ATPase subunit A, at 596,836 to 599,468 15351

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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592,765 - 15349 mRNA_6981 0.82 +2.4
592,799 - 15349 mRNA_6981 0.83 +0.1
592,962 - -0.7
593,056 - +0.3
593,236 - +0.2
593,249 - +2.1
593,267 + +0.8
593,268 + +1.9
593,364 + -0.7
593,394 - +0.3
593,403 - +1.6
593,407 + -0.1
593,469 + -0.3
593,568 + +1.1
593,615 + -0.0
593,625 - +0.7
593,704 + +0.6
593,741 - -0.3
596,454 + +1.0
596,463 - +1.0
596,464 - -0.1
596,496 - +0.1
596,496 + +1.0
596,501 - -1.9
596,513 + -0.7
596,531 + -1.2
596,589 - +0.5
596,620 - +1.4
596,696 - +1.1
596,704 - +0.3
596,715 + +2.1
596,861 + +0.1

Or see this region's nucleotide sequence