Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7024

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15391 and 15392 are separated by 129 nucleotides15392 and 15393 are separated by 253 nucleotides mRNA_7023: 15391 - Interpro RNA polymerase I-specific transcription-initiation factor, at 696,469 to 700,104 15391 mRNA_7024: 15392 - K02179 BUB2 cell cycle arrest protein BUB2, at 700,234 to 701,558 15392 mRNA_7025: 15393 - K13122 FRG1 protein FRG1, at 701,812 to 702,904 15393

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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700,177 + -2.2
700,186 - -0.2
700,190 + +0.4
700,191 + -0.2
700,320 - -0.6
700,321 - -0.4
700,355 + +0.0
700,440 - 15392 mRNA_7024 0.16 +1.3
700,463 - 15392 mRNA_7024 0.17 -0.1
700,759 + 15392 mRNA_7024 0.40 +1.2
700,894 + 15392 mRNA_7024 0.50 +2.6
701,057 - 15392 mRNA_7024 0.62 +1.1
701,058 + 15392 mRNA_7024 0.62 +1.0
701,067 - 15392 mRNA_7024 0.63 +1.7
701,190 - 15392 mRNA_7024 0.72 +0.1
701,492 - -0.5
701,760 - -0.3
701,760 + +1.1
701,762 + -0.7
701,850 + -0.1
702,019 - 15393 mRNA_7025 0.19 -1.1

Or see this region's nucleotide sequence