Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7026

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15393 and 15394 are separated by 182 nucleotides15394 and 15395 are separated by 263 nucleotides mRNA_7025: 15393 - K13122 FRG1 protein FRG1, at 701,812 to 702,904 15393 mRNA_7026: 15394 - K12827 SF3A3, SAP61, PRP9 splicing factor 3A subunit 3, at 703,087 to 704,939 15394 mRNA_7027: 15395 - K13025 EIF4A3, FAL1 ATP-dependent RNA helicase, at 705,203 to 707,269 15395

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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702,561 - 15393 mRNA_7025 0.69 -1.8
702,602 - 15393 mRNA_7025 0.72 -0.8
702,633 + 15393 mRNA_7025 0.75 +1.8
702,906 - +1.6
702,934 + +1.0
702,953 - +1.2
704,955 - -1.3
705,124 - +2.4

Or see this region's nucleotide sequence