Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7054

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15421 and 15422 are separated by 233 nucleotides15422 and 15423 are separated by 278 nucleotides mRNA_7053: 15421 - K01192 E3.2.1.25, MANBA, manB beta-mannosidase, at 766,585 to 770,373 15421 mRNA_7054: 15422 - K14018 PLAA, DOA1, UFD3 phospholipase A-2-activating protein, at 770,607 to 773,938 15422 mRNA_7055: 15423 - K03841 FBP, fbp fructose-1,6-bisphosphatase I, at 774,217 to 775,850 15423

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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770,030 + +0.4
770,158 - -0.7
770,370 - +0.5
773,982 + -0.0
774,003 + +2.3
774,025 + -0.6
774,152 + +0.4
774,467 - 15423 mRNA_7055 0.15 +2.4
774,871 - 15423 mRNA_7055 0.40 +0.1

Or see this region's nucleotide sequence