Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7066

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15433 and 15434 are separated by 277 nucleotides15434 and 15435 are separated by 404 nucleotides mRNA_7065: 15433 - K03469 rnhA, RNASEH1 ribonuclease HI, at 797,694 to 798,933 15433 mRNA_7066: 15434 - K00799 GST, gst glutathione S-transferase, at 799,211 to 800,128 15434 mRNA_7067: 15435 - K13507 GAT glycerol-3-phosphate O-acyltransferase / dihydroxyacetone phosphate acyltransferase, at 800,533 to 803,766 15435

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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798,220 - 15433 mRNA_7065 0.42 +2.2
798,325 - 15433 mRNA_7065 0.51 -0.4
798,470 + 15433 mRNA_7065 0.63 -0.0
798,855 + +1.0
799,632 - 15434 mRNA_7066 0.46 +0.2
799,794 + 15434 mRNA_7066 0.64 +0.9
799,891 - 15434 mRNA_7066 0.74 +0.3
800,042 + +3.0
800,202 - -0.8
800,213 - -0.8
800,316 - -0.2
800,354 + -1.3
800,514 - +0.6
800,761 + +1.1

Or see this region's nucleotide sequence