Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7090

Experiment: YPD

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15457 and 15458 are separated by 198 nucleotides15458 and 15459 are separated by 305 nucleotides mRNA_7089: 15457 - Hypothetical Protein, at 857,242 to 857,760 15457 mRNA_7090: 15458 - Hypothetical Protein, at 857,959 to 859,367 15458 mRNA_7091: 15459 - ProSitePatterns-Zinc finger C2H2 type domain signature.-PS00028,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157, at 859,673 to 862,971 15459

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YPD
remove
856,960 + -0.0
857,098 + +2.5
857,523 - 15457 mRNA_7089 0.54 -0.1
857,838 + -0.8
857,840 - -0.7
858,154 - 15458 mRNA_7090 0.14 -1.2
858,555 - 15458 mRNA_7090 0.42 +0.2
858,866 - 15458 mRNA_7090 0.64 +0.3
859,728 - +1.4
859,861 + +0.1
859,871 - -1.6
859,889 + +1.3
859,889 - +0.2
859,897 + +3.5
859,897 + +2.0
860,041 + 15459 mRNA_7091 0.11 +0.7
860,062 - 15459 mRNA_7091 0.12 -0.2
860,062 + 15459 mRNA_7091 0.12 -0.6
860,070 + 15459 mRNA_7091 0.12 +0.3
860,073 - 15459 mRNA_7091 0.12 +0.7
860,077 + 15459 mRNA_7091 0.12 +0.8
860,077 + 15459 mRNA_7091 0.12 +1.0
860,191 - 15459 mRNA_7091 0.16 +2.1
860,206 + 15459 mRNA_7091 0.16 +0.6
860,216 - 15459 mRNA_7091 0.16 -0.1
860,224 + 15459 mRNA_7091 0.17 +1.0

Or see this region's nucleotide sequence