Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7146

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15513 and 15514 are separated by 646 nucleotides15514 and 15515 are separated by 18 nucleotides mRNA_7145: 15513 - BLAST putative ccch zinc finger dna binding protein [Eu..., at 991,165 to 992,673 15513 mRNA_7146: 15514 - Hypothetical Protein, at 993,320 to 994,345 15514 mRNA_7147: 15515 - Hypothetical Protein, at 994,364 to 995,021 15515

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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992,351 - 15513 mRNA_7145 0.79 +0.1
992,496 + 15513 mRNA_7145 0.88 +1.5
992,968 + +1.4
993,084 - +0.9
993,113 + +1.6
994,129 - 15514 mRNA_7146 0.79 +1.2
994,165 + 15514 mRNA_7146 0.82 +1.5
994,483 + 15515 mRNA_7147 0.18 -1.4
994,811 + 15515 mRNA_7147 0.68 -0.4
994,923 + 15515 mRNA_7147 0.85 +1.7
994,942 - 15515 mRNA_7147 0.88 +0.7
994,950 + 15515 mRNA_7147 0.89 +0.7
994,974 + +0.5
995,077 - +0.1

Or see this region's nucleotide sequence