Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7150

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15517 and 15518 are separated by 220 nucleotides15518 and 15519 are separated by 194 nucleotides mRNA_7149: 15517 - K12733 PPIL1 peptidyl-prolyl cis-trans isomerase-like 1, at 998,100 to 998,920 15517 mRNA_7150: 15518 - K01874 MARS, metG methionyl-tRNA synthetase, at 999,141 to 1,001,312 15518 mRNA_7151: 15519 - BLAST putative transmembrane protein [Rhizoctonia solani 123E], at 1,001,507 to 1,002,023 15519

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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998,242 + 15517 mRNA_7149 0.17 -0.5
998,309 - 15517 mRNA_7149 0.25 -0.4
998,664 + 15517 mRNA_7149 0.69 -0.6
998,681 + 15517 mRNA_7149 0.71 +0.9
998,770 + 15517 mRNA_7149 0.82 +0.2
998,795 + 15517 mRNA_7149 0.85 +2.5
998,801 - 15517 mRNA_7149 0.85 +0.6
998,812 - 15517 mRNA_7149 0.87 +1.6
998,941 + +1.4
998,956 + +2.2
999,083 - +3.1
999,087 - -0.1
999,129 - +1.3
1,002,232 + +2.0

Or see this region's nucleotide sequence