Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7205

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15572 and 15573 are separated by 493 nucleotides15573 and 15574 are separated by 220 nucleotides mRNA_7204: 15572 - HMMPfam-F-box-like-PF12937,ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF52047,SUPERFAMILY--SSF81383, at 1,118,397 to 1,120,170 15572 mRNA_7205: 15573 - Hypothetical Protein, at 1,120,664 to 1,121,084 15573 mRNA_7206: 15574 - BLAST checkpoint 9-1-1 complex, HUS1 component [Moesziomyce..., at 1,121,305 to 1,122,113 15574

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,119,820 + 15572 mRNA_7204 0.80 -1.3
1,119,924 + 15572 mRNA_7204 0.86 +0.4
1,120,039 - +2.1
1,120,055 - +0.3
1,120,060 - +0.5
1,120,071 - +1.6
1,120,104 + -0.8
1,120,224 + +0.4
1,120,228 - +0.3
1,120,229 + +1.7
1,120,234 + -0.4
1,120,237 + -0.5
1,120,258 + -0.2
1,120,363 + -0.3
1,120,421 + +1.0
1,120,479 + -0.8
1,120,484 + +0.4
1,120,506 - +1.0
1,120,516 + -0.3
1,120,569 + +0.8
1,120,582 - -1.4
1,120,584 + -0.0
1,120,828 + 15573 mRNA_7205 0.39 +0.9
1,120,835 + 15573 mRNA_7205 0.41 +0.4
1,120,838 + 15573 mRNA_7205 0.41 +0.6
1,120,864 + 15573 mRNA_7205 0.48 +0.4
1,120,926 - 15573 mRNA_7205 0.62 +0.6
1,120,968 - 15573 mRNA_7205 0.72 +2.4
1,120,969 - 15573 mRNA_7205 0.72 -0.7
1,120,970 + 15573 mRNA_7205 0.73 -0.2
1,120,980 + 15573 mRNA_7205 0.75 -0.8
1,121,002 + 15573 mRNA_7205 0.80 +0.3
1,121,050 + +0.8
1,121,103 + +0.3
1,121,104 + -1.8
1,121,116 - +0.3
1,121,137 + +0.3
1,121,141 + -1.5
1,121,152 + +0.7
1,121,153 - +0.2
1,121,153 - +0.6
1,121,154 - +0.7
1,121,166 - -1.8
1,121,170 - +0.8
1,121,174 - +3.6
1,121,175 - -0.3
1,121,175 - +0.7
1,121,181 - +0.3
1,121,183 + -0.4
1,121,183 + +0.4
1,121,197 + +0.7
1,121,200 + +0.3
1,121,208 + +3.5
1,121,214 + +0.2
1,121,220 - -0.3
1,121,313 - +1.2
1,121,343 + +0.8
1,121,405 + 15574 mRNA_7206 0.12 +0.9
1,121,412 - 15574 mRNA_7206 0.13 +1.6
1,121,543 + 15574 mRNA_7206 0.29 -2.0
1,121,813 - 15574 mRNA_7206 0.63 +0.9

Or see this region's nucleotide sequence