Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7220

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15587 and 15588 are separated by 95 nucleotides mRNA_7219: 15587 - K15053 CHMP7 charged multivesicular body protein 7, at 1,158,652 to 1,160,281 15587 mRNA_7220: 15588 - HMMPfam-zinc-RING finger domain-PF14634,ProSitePatterns-Zinc finger RING-type signature.-PS00518,ProSiteProfiles-Zinc finger RING-type profile.-PS50089,SUPERFAMILY--SSF57850, at 1,160,377 to 1,161,832 15588

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,159,726 + 15587 mRNA_7219 0.66 +0.9
1,160,155 - +1.7
1,160,163 - +0.8
1,160,184 - -1.0
1,160,299 - -0.2
1,160,306 + +0.0
1,160,313 + +0.5
1,160,600 - 15588 mRNA_7220 0.15 +1.0
1,160,762 - 15588 mRNA_7220 0.26 -0.4
1,161,180 - 15588 mRNA_7220 0.55 +2.2
1,161,494 + 15588 mRNA_7220 0.77 +2.6
1,161,494 + 15588 mRNA_7220 0.77 +0.2
1,161,505 - 15588 mRNA_7220 0.77 +1.2
1,161,776 - +0.2
1,161,795 - +1.1
1,161,802 + +0.5
1,162,388 - +0.6
1,162,543 + +0.3

Or see this region's nucleotide sequence