Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7275

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15642 and 15643 are separated by 671 nucleotides15643 and 15644 are separated by 85 nucleotides mRNA_7274: 15642 - Hypothetical Protein, at 1,275,952 to 1,277,293 15642 mRNA_7275: 15643 - HMMPfam-Uncharacterized conserved protein (DUF2346)-PF09803, at 1,277,965 to 1,278,426 15643 mRNA_7276: 15644 - K17806 PAM17, TIM23 mitochondrial import inner membrane translocase subunit TIM23, at 1,278,512 to 1,279,383 15644

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,277,727 + -0.7
1,278,434 - +1.0
1,278,436 - +0.2
1,278,451 - +1.1
1,278,452 - +1.1
1,278,750 - 15644 mRNA_7276 0.27 -0.2
1,278,764 + 15644 mRNA_7276 0.29 +0.5
1,278,880 - 15644 mRNA_7276 0.42 -0.1
1,278,881 + 15644 mRNA_7276 0.42 +0.7
1,278,902 + 15644 mRNA_7276 0.45 -0.2
1,279,149 - 15644 mRNA_7276 0.73 +1.5
1,279,159 + 15644 mRNA_7276 0.74 -0.4
1,279,279 - 15644 mRNA_7276 0.88 +0.2

Or see this region's nucleotide sequence