Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7288

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15655 and 15656 are separated by 461 nucleotides15656 and 15657 are separated by 464 nucleotides mRNA_7287: 15655 - KOG1650 Predicted K+/H+-antiporter, at 1,300,523 to 1,304,371 15655 mRNA_7288: 15656 - Hypothetical Protein, at 1,304,833 to 1,305,984 15656 mRNA_7289: 15657 - K12877 MAGOH protein mago nashi, at 1,306,449 to 1,307,582 15657

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,303,898 + 15655 mRNA_7287 0.88 +0.5
1,304,159 + +1.2
1,304,159 + +0.6
1,304,289 - +0.1
1,304,311 - +1.1
1,304,319 + +0.2
1,304,468 - +2.5
1,304,602 + +1.5
1,304,605 + -0.6
1,304,605 - +1.1
1,304,746 - -2.1
1,304,890 + -0.2
1,305,039 - 15656 mRNA_7288 0.18 +0.6
1,305,184 + 15656 mRNA_7288 0.30 +1.9
1,305,186 - 15656 mRNA_7288 0.31 +1.3
1,305,194 - 15656 mRNA_7288 0.31 -0.3
1,305,593 + 15656 mRNA_7288 0.66 +1.2
1,305,685 + 15656 mRNA_7288 0.74 +0.1
1,305,761 - 15656 mRNA_7288 0.81 +0.8
1,305,813 + 15656 mRNA_7288 0.85 +2.5
1,305,813 + 15656 mRNA_7288 0.85 +2.0
1,306,097 + +0.0

Or see this region's nucleotide sequence