Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7331

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15698 and 15699 are separated by 380 nucleotides15699 and 15700 are separated by 698 nucleotides mRNA_7330: 15698 - KOG0409 Predicted dehydrogenase, at 22,556 to 24,304 15698 mRNA_7331: 15699 - KOG1666 V-SNARE, at 24,685 to 25,773 15699 mRNA_7332: 15700 - K05542 DUS1 tRNA-dihydrouridine synthase 1, at 26,472 to 27,994 15700

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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23,877 + 15698 mRNA_7330 0.76 -2.8
24,463 + +0.9
24,490 + -0.0
24,493 + -0.4
24,495 + +1.0
24,635 - -2.4
24,672 + -0.5
24,676 + +0.4
24,772 - -0.7
24,939 + 15699 mRNA_7331 0.23 +1.6
25,082 + 15699 mRNA_7331 0.36 +0.0
25,245 + 15699 mRNA_7331 0.51 -0.5
25,558 + 15699 mRNA_7331 0.80 +0.0
25,816 - +1.4
25,923 - +0.3
25,931 - +2.6
25,934 + +0.0
26,115 + +0.6
26,257 - -1.0
26,270 - -0.3
26,541 + +0.7
26,542 - +1.2
26,544 - -0.3
26,717 + 15700 mRNA_7332 0.16 +2.7

Or see this region's nucleotide sequence