Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7336

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15702 and 15703 are separated by 221 nucleotides15703 and 15704 are separated by 4 nucleotides15704 and 15705 are separated by 287 nucleotides mRNA_7334: 15702 - HMMPfam-RTA1 like protein-PF04479, at 29,500 to 31,086 15702 mRNA_7335: 15703 - Hypothetical Protein, at 31,308 to 31,781 15703 mRNA_7336: 15704 - Hypothetical Protein, at 31,786 to 32,791 15704 mRNA_7337: 15705 - KOG2614 Kynurenine 3-monooxygenase and related flavoprotein monooxygenases, at 33,079 to 35,089 15705

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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30,819 + 15702 mRNA_7334 0.83 +0.2
30,820 - 15702 mRNA_7334 0.83 +1.2
30,846 + 15702 mRNA_7334 0.85 +0.3
30,902 - 15702 mRNA_7334 0.88 +1.3
30,920 - 15702 mRNA_7334 0.89 +0.8
30,947 - +1.7
31,065 - -0.3
31,237 + +0.5
31,239 + +0.8
31,259 + -0.9
31,263 + +1.0
31,271 + +0.7
31,285 - -0.0
31,291 - -1.8
31,293 - +1.3
31,299 - +0.9
31,301 - +1.0
31,303 - -2.2
31,315 - +1.4
31,326 - -0.1
31,330 - -1.2
31,340 + +1.6
31,341 - +0.2
31,342 - +2.3
31,372 - 15703 mRNA_7335 0.14 -0.1
31,383 + 15703 mRNA_7335 0.16 +0.4
31,385 - 15703 mRNA_7335 0.16 +1.6
31,389 - 15703 mRNA_7335 0.17 -2.0
31,397 + 15703 mRNA_7335 0.19 -0.6
31,410 + 15703 mRNA_7335 0.22 +1.3
31,434 + 15703 mRNA_7335 0.27 +0.1
31,458 + 15703 mRNA_7335 0.32 +1.6
31,532 - 15703 mRNA_7335 0.47 +0.1
32,270 - 15704 mRNA_7336 0.48 +1.3
32,426 - 15704 mRNA_7336 0.64 +1.2
32,589 + 15704 mRNA_7336 0.80 +1.4
32,700 + -1.3
32,708 - +0.0
32,748 - +2.0
32,987 - -0.7
33,571 + 15705 mRNA_7337 0.24 +0.2
33,701 - 15705 mRNA_7337 0.31 +1.3

Or see this region's nucleotide sequence