Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7340

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15707 and 15708 are separated by 184 nucleotides15708 and 15709 are separated by 93 nucleotides mRNA_7339: 15707 - HMMPfam-Protein of unknown function (DUF1649)-PF07855, at 38,235 to 39,594 15707 mRNA_7340: 15708 - K08073 PNKP bifunctional polynucleotide phosphatase/kinase, at 39,779 to 41,768 15708 mRNA_7341: 15709 - KOG4062 6-O-methylguanine-DNA methyltransferase MGMT/MGT1, involved in DNA repair, at 41,862 to 42,699 15709

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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38,891 + 15707 mRNA_7339 0.48 +0.8
38,904 - 15707 mRNA_7339 0.49 -1.0
39,308 + 15707 mRNA_7339 0.79 -2.7
39,336 + 15707 mRNA_7339 0.81 +1.4
39,347 + 15707 mRNA_7339 0.82 -1.5
39,443 + 15707 mRNA_7339 0.89 -0.3
39,578 - +0.8
39,604 - -0.9
39,626 + -0.0
39,635 - -0.5
39,640 + -0.7
39,786 + +0.4
40,200 - 15708 mRNA_7340 0.21 +1.0
40,202 - 15708 mRNA_7340 0.21 +0.6
40,203 + 15708 mRNA_7340 0.21 +1.1
40,249 + 15708 mRNA_7340 0.24 -0.9
40,544 + 15708 mRNA_7340 0.38 -0.3
41,042 - 15708 mRNA_7340 0.63 -0.2
41,059 - 15708 mRNA_7340 0.64 +2.2
41,340 - 15708 mRNA_7340 0.78 -0.3
41,525 + 15708 mRNA_7340 0.88 +0.7
41,738 + +0.2
41,803 + +2.7
41,934 - -0.1
41,960 + 15709 mRNA_7341 0.12 -0.2
42,104 + 15709 mRNA_7341 0.29 -0.6
42,238 - 15709 mRNA_7341 0.45 -1.4
42,344 + 15709 mRNA_7341 0.58 -0.1
42,392 - 15709 mRNA_7341 0.63 +0.4
42,697 - +1.0
42,701 + +1.3

Or see this region's nucleotide sequence