Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7375

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15743 and 15744 are separated by 295 nucleotides mRNA_7375: 15743 - HMMPfam-Chromosome segregation protein Csm1/Pcs1-PF12539, at 126,034 to 127,845 15743 mRNA_7376: 15744 - K19030 PFKFB4 6-phosphofructo-2-kinase / fructose-2,6-biphosphatase 4, at 128,141 to 130,355 15744

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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125,126 + +0.8
125,631 - -0.5
125,808 + -0.3
125,815 + +1.0
125,817 + +0.2
125,824 + +0.0
125,830 + -1.9
126,920 - 15743 mRNA_7375 0.49 -0.1
126,949 + 15743 mRNA_7375 0.50 -0.2
127,832 + -0.7
127,965 - -1.2
127,973 + +0.7
128,074 + -1.7
128,401 - 15744 mRNA_7376 0.12 +0.8
128,401 - 15744 mRNA_7376 0.12 -0.5
128,543 - 15744 mRNA_7376 0.18 +0.5
128,556 + 15744 mRNA_7376 0.19 -2.2
128,584 + 15744 mRNA_7376 0.20 -1.6
128,684 - 15744 mRNA_7376 0.25 +1.5

Or see this region's nucleotide sequence