Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7379

Experiment: YPD

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15747 and 15748 are separated by 228 nucleotides mRNA_7379: 15747 - SUPERFAMILY--SSF49344, at 134,802 to 136,760 15747 mRNA_7380: 15748 - K01897 ACSL, fadD long-chain acyl-CoA synthetase, at 136,989 to 140,179 15748

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YPD
remove
134,124 + +0.8
134,449 + +0.1
134,744 + +0.3
134,754 - -0.3
135,030 + 15747 mRNA_7379 0.12 +0.4
135,180 - 15747 mRNA_7379 0.19 +0.6
135,196 + 15747 mRNA_7379 0.20 +0.4
135,313 + 15747 mRNA_7379 0.26 +0.7
135,496 - 15747 mRNA_7379 0.35 -0.0
135,496 + 15747 mRNA_7379 0.35 +1.7
135,499 - 15747 mRNA_7379 0.36 +0.7
135,500 - 15747 mRNA_7379 0.36 +1.3
135,753 + 15747 mRNA_7379 0.49 +0.5
135,764 + 15747 mRNA_7379 0.49 -0.3
135,917 + 15747 mRNA_7379 0.57 +1.3
135,918 - 15747 mRNA_7379 0.57 +0.1
136,050 + 15747 mRNA_7379 0.64 +0.2
136,065 - 15747 mRNA_7379 0.64 -0.2
136,186 + 15747 mRNA_7379 0.71 +0.9
136,539 + 15747 mRNA_7379 0.89 +0.8
136,639 - +0.3
136,639 - +0.5
136,682 + +1.4
136,683 + -0.2
136,704 + +1.8
136,706 + -0.2
136,707 - +2.7
136,708 - +0.1
136,708 - -0.7
136,712 + +0.2
136,718 + -0.5
136,725 + +0.2
136,727 + +1.8
136,760 + -1.0
136,760 + +1.4
137,320 - 15748 mRNA_7380 0.10 -0.4
137,352 + 15748 mRNA_7380 0.11 +0.1

Or see this region's nucleotide sequence