Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7435

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15802 and 15803 are separated by 762 nucleotides15803 and 15804 are separated by 485 nucleotides mRNA_7434: 15802 - HMMPfam-Outer membrane protein TOM13-PF08219, at 270,590 to 273,357 15802 mRNA_7435: 15803 - K09539 DNAJC19 DnaJ homolog subfamily C member 19, at 274,120 to 274,486 15803 mRNA_7436: 15804 - Hypothetical Protein, at 274,972 to 276,124 15804

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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273,432 - -0.8
273,434 + -0.2
273,436 - -0.1
273,438 + +0.9
273,438 - +1.2
273,450 - -0.0
273,458 - +0.7
273,458 - -0.8
273,459 - -0.7
273,463 + +1.1
273,489 + +1.4
273,590 - +1.2
273,595 + +1.4
273,714 - +1.2
275,317 + 15804 mRNA_7436 0.30 -0.4
275,348 - 15804 mRNA_7436 0.33 -1.5

Or see this region's nucleotide sequence