Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7447

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15814 and 15815 are separated by 365 nucleotides mRNA_7446: 15814 - K14085 ALDH7A1 aldehyde dehydrogenase family 7 member A1, at 295,299 to 297,030 15814 mRNA_7447: 15815 - HMMPfam-Uncharacterized protein conserved in bacteria (DUF2236)-PF09995, at 297,396 to 299,306 15815

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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296,495 - 15814 mRNA_7446 0.69 +1.2
296,887 + +0.8
297,014 + +0.1
297,019 + +0.1
297,039 - -0.4
297,163 - -0.0
297,320 - -0.5
297,338 + -1.6
297,342 + +1.7
297,349 + -0.5
297,356 + +1.0
297,357 + +1.2
297,473 + +1.3
297,491 + -0.4
297,510 + +0.2
297,765 + 15815 mRNA_7447 0.19 +0.1
298,095 - 15815 mRNA_7447 0.37 -0.3
298,217 - 15815 mRNA_7447 0.43 +1.6
298,522 - 15815 mRNA_7447 0.59 +0.3
299,078 + 15815 mRNA_7447 0.88 +0.0
299,099 + 15815 mRNA_7447 0.89 +0.2
299,230 + +1.2
299,375 - +2.2
299,410 - -0.3
299,416 + +1.1
299,421 - -0.6
299,421 - +2.3
299,545 - +1.1
299,575 + -0.6
299,621 + +0.8
299,724 + -2.2
299,847 - -0.2
299,848 - +0.1
299,855 + -1.5
299,872 + +3.1
299,917 + +1.0
300,260 - +1.1

Or see this region's nucleotide sequence