Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7479

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15845 and 15846 are separated by 246 nucleotides15846 and 15847 are separated by 205 nucleotides15847 and 15848 are separated by 123 nucleotides mRNA_7477: 15845 - K07243 FTR, FTH1, efeU high-affinity iron transporter, at 380,479 to 382,307 15845 mRNA_7478: 15846 - Hypothetical Protein, at 382,554 to 382,817 15846 mRNA_7479: 15847 - Hypothetical Protein, at 383,023 to 384,509 15847 mRNA_7480: 15848 - K01868 TARS, thrS threonyl-tRNA synthetase, at 384,633 to 387,547 15848

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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382,347 - +0.6
382,347 + +0.4
382,352 - +1.5
382,464 - +0.8
382,623 + 15846 mRNA_7478 0.26 -0.1
382,624 - 15846 mRNA_7478 0.27 +1.1
382,653 + 15846 mRNA_7478 0.38 +0.0
382,655 + 15846 mRNA_7478 0.38 +0.9
382,934 + -1.4
382,937 - -0.5
382,937 + -0.4
383,256 + 15847 mRNA_7479 0.16 -2.5
383,256 + 15847 mRNA_7479 0.16 +0.1
383,672 + 15847 mRNA_7479 0.44 +1.9
384,266 + 15847 mRNA_7479 0.84 -0.1
384,277 - 15847 mRNA_7479 0.84 +0.5
384,277 - 15847 mRNA_7479 0.84 +0.6
384,325 - 15847 mRNA_7479 0.88 -0.6
384,394 - +0.1
384,429 + -0.7
384,529 + -1.6
385,423 + 15848 mRNA_7480 0.27 +0.5

Or see this region's nucleotide sequence