Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7491

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15858 and 15859 are separated by 86 nucleotides mRNA_7490: 15858 - K20167 TBC1D14 TBC1 domain family member 14, at 409,726 to 411,732 15858 mRNA_7491: 15859 - K19267 qorB NAD(P)H dehydrogenase (quinone), at 411,819 to 412,834 15859

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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410,858 + 15858 mRNA_7490 0.56 +1.3
411,007 - 15858 mRNA_7490 0.64 +0.8
411,143 + 15858 mRNA_7490 0.71 +0.4
411,566 - +1.3
411,739 + -1.4
411,748 - +0.1
411,765 - -1.1
411,871 - +0.2
411,895 + +0.0
412,000 - 15859 mRNA_7491 0.18 -1.5
412,034 + 15859 mRNA_7491 0.21 +1.4
412,036 - 15859 mRNA_7491 0.21 +1.6
412,037 + 15859 mRNA_7491 0.21 -1.6
412,195 + 15859 mRNA_7491 0.37 -0.4
412,195 + 15859 mRNA_7491 0.37 +0.4
412,195 + 15859 mRNA_7491 0.37 -2.2
412,200 - 15859 mRNA_7491 0.38 +1.1
412,461 + 15859 mRNA_7491 0.63 +1.5
412,481 - 15859 mRNA_7491 0.65 +0.0
412,763 - +2.0
412,766 - +1.2
412,789 + -0.6
412,867 - -0.5
412,916 - +0.3
412,937 + -1.3
413,041 - +0.6
413,207 + +0.1
413,319 - +1.2
413,353 - -0.3
413,370 + +0.6
413,651 - +0.1
413,785 - +3.6

Or see this region's nucleotide sequence