Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7493

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15860 and 15861 are separated by 271 nucleotides15861 and 15862 are separated by 125 nucleotides mRNA_7492: 15860 - KOG2301 Voltage-gated Ca2+ channels, alpha1 subunits, at 413,900 to 421,307 15860 mRNA_7493: 15861 - K00489 CYP7A1 cholesterol 7alpha-monooxygenase, at 421,579 to 423,387 15861 mRNA_7494: 15862 - K05760 PXN paxillin, at 423,513 to 425,436 15862

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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420,648 - +2.9
420,869 + -0.7
420,939 - +0.5
420,957 - -1.9
421,093 - -1.0
421,120 - +2.8
421,253 + -0.5
421,408 - +1.4
421,665 - -1.5
421,666 - +0.1
421,677 - +2.2
421,678 - -0.2
421,681 - +0.1
421,689 - +1.5
421,690 + -0.4
421,692 - -1.6
421,694 + +0.5
421,697 + +1.1
421,842 + 15861 mRNA_7493 0.15 +0.5
421,969 - 15861 mRNA_7493 0.22 +0.1
421,970 - 15861 mRNA_7493 0.22 +1.8
421,976 + 15861 mRNA_7493 0.22 -0.8
421,988 - 15861 mRNA_7493 0.23 +0.8
422,126 + 15861 mRNA_7493 0.30 +1.0
422,272 + 15861 mRNA_7493 0.38 +3.3
422,307 + 15861 mRNA_7493 0.40 -0.3
422,378 + 15861 mRNA_7493 0.44 +1.4
422,445 + 15861 mRNA_7493 0.48 +1.2
422,574 - 15861 mRNA_7493 0.55 +0.6
422,580 + 15861 mRNA_7493 0.55 +1.9
422,708 + 15861 mRNA_7493 0.62 +1.2
423,359 - +2.7
423,359 + +0.6
423,715 + 15862 mRNA_7494 0.10 +0.1
424,015 - 15862 mRNA_7494 0.26 -0.3
424,144 - 15862 mRNA_7494 0.33 -0.9
424,281 - 15862 mRNA_7494 0.40 +0.9

Or see this region's nucleotide sequence