Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7553

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15920 and 15921 are separated by 423 nucleotides15921 and 15922 are separated by 126 nucleotides mRNA_7552: 15920 - K11130 NOP10, NOLA3 H/ACA ribonucleoprotein complex subunit 3, at 546,828 to 547,296 15920 mRNA_7553: 15921 - KOG4558 Uncharacterized conserved protein, at 547,720 to 548,858 15921 mRNA_7554: 15922 - K07359 CAMKK calcium/calmodulin-dependent protein kinase kinase, at 548,985 to 552,468 15922

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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546,741 + +1.1
546,868 - +0.4
546,877 - 15920 mRNA_7552 0.10 +0.2
547,464 - -1.5
547,583 + +0.9
547,584 - +0.4
547,584 - -0.6
547,585 - +0.4
547,589 + -1.3
547,610 + -0.5
547,611 + +0.9
547,613 + +0.0
547,692 - +1.7
547,698 + +0.9
547,699 - -0.3
547,702 - -0.4
547,703 - +1.7
547,708 - +0.5
547,710 - +0.0
547,714 - -0.3
547,720 - -2.2
547,728 + -0.1
547,731 - +1.6
547,854 - 15921 mRNA_7553 0.12 +0.1
547,870 + 15921 mRNA_7553 0.13 +1.1
548,002 - 15921 mRNA_7553 0.25 -0.1
548,005 - 15921 mRNA_7553 0.25 -0.2
548,006 + 15921 mRNA_7553 0.25 -0.0
548,022 + 15921 mRNA_7553 0.27 -1.3
548,472 + 15921 mRNA_7553 0.66 +1.3
548,509 - 15921 mRNA_7553 0.69 +1.9
548,888 - +0.8
549,301 + +0.3

Or see this region's nucleotide sequence