Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7574

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15941 and 15942 are separated by 246 nucleotides15942 and 15943 are separated by 572 nucleotides mRNA_7573: 15941 - KOG0331 ATP-dependent RNA helicase, at 597,101 to 600,100 15941 mRNA_7574: 15942 - K15275 SLC35B1 solute carrier family 35 (UDP-galactose transporter), member B1, at 600,347 to 601,742 15942 mRNA_7575: 15943 - HMMPfam-Tetratricopeptide repeat-PF00515,HMMPfam-Tetratricopeptide repeat-PF13371,ProSiteProfiles-TPR repeat region circular profile.-PS50293,SMART-Tetratricopeptide repeats-SM00028,SUPERFAMILY--SSF48452, at 602,315 to 604,765 15943

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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599,543 + 15941 mRNA_7573 0.81 +0.8
599,616 + 15941 mRNA_7573 0.84 -0.1
600,095 + -2.3
600,252 - -0.8
601,913 + +0.5
602,308 - -0.9
602,446 - +1.5
602,574 + 15943 mRNA_7575 0.11 +1.6
602,591 - 15943 mRNA_7575 0.11 -0.0
602,607 - 15943 mRNA_7575 0.12 +0.6

Or see this region's nucleotide sequence