Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7619

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15986 and 15987 are separated by 186 nucleotides15987 and 15988 are separated by 889 nucleotides mRNA_7618: 15986 - K14549 UTP15 U3 small nucleolar RNA-associated protein 15, at 694,417 to 696,381 15986 mRNA_7619: 15987 - Interpro NADH-ubiquinone oxidoreductase MWFE subunit 0, at 696,568 to 697,325 15987 mRNA_7620: 15988 - Hypothetical Protein, at 698,215 to 700,242 15988

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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697,785 - +1.0
697,790 - -1.0
697,795 - -0.0
697,805 - +0.0
697,809 - +2.6
697,936 - -1.2
697,950 + +0.4
697,964 + +0.6
697,964 - +1.9
698,115 + +0.9
698,147 - +0.2
698,239 - +0.7
698,241 + +1.1

Or see this region's nucleotide sequence