Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7620

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15987 and 15988 are separated by 889 nucleotides15988 and 15989 are separated by 130 nucleotides15989 and 15990 are separated by 139 nucleotides mRNA_7619: 15987 - Interpro NADH-ubiquinone oxidoreductase MWFE subunit 0, at 696,568 to 697,325 15987 mRNA_7620: 15988 - Hypothetical Protein, at 698,215 to 700,242 15988 mRNA_7621: 15989 - KOG4449 Translocase of outer mitochondrial membrane complex, subunit TOM7, at 700,373 to 700,880 15989 mRNA_7622: 15990 - K17496 TIM50 mitochondrial import inner membrane translocase subunit TIM50, at 701,020 to 702,915 15990

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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697,785 - +1.0
697,790 - -1.0
697,795 - -0.0
697,805 - +0.0
697,809 - +2.6
697,936 - -1.2
697,950 + +0.4
697,964 + +0.6
697,964 - +1.9
698,115 + +0.9
698,147 - +0.2
698,239 - +0.7
698,241 + +1.1
698,404 + +1.9
698,547 + 15988 mRNA_7620 0.16 -1.7
698,667 - 15988 mRNA_7620 0.22 -1.5
699,738 + 15988 mRNA_7620 0.75 -1.1
699,849 - 15988 mRNA_7620 0.81 -0.5
699,986 - 15988 mRNA_7620 0.87 +0.5
700,688 + 15989 mRNA_7621 0.62 +0.1
700,865 - -0.2
700,866 - +2.6
700,880 - +0.6
700,902 + -0.6

Or see this region's nucleotide sequence