Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7628

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15995 and 15996 are separated by 87 nucleotides15996 and 15997 are separated by 129 nucleotides mRNA_7627: 15995 - K01273 DPEP membrane dipeptidase, at 711,202 to 712,775 15995 mRNA_7628: 15996 - KOG1721 FOG Zn-finger, at 712,863 to 715,455 15996 mRNA_7629: 15997 - K20474 RINT1, TIP20 RAD50-interacting protein 1, at 715,585 to 720,215 15997

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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712,103 + 15995 mRNA_7627 0.57 +2.2
712,140 + 15995 mRNA_7627 0.60 +1.5
712,156 - 15995 mRNA_7627 0.61 -2.2
712,264 - 15995 mRNA_7627 0.67 +3.6
712,578 - 15995 mRNA_7627 0.87 +1.0
712,603 - 15995 mRNA_7627 0.89 -0.1
712,717 + -1.0
712,872 + -0.8
713,154 - 15996 mRNA_7628 0.11 -0.8
713,454 - 15996 mRNA_7628 0.23 -0.0
713,477 - 15996 mRNA_7628 0.24 +0.0
713,516 + 15996 mRNA_7628 0.25 -2.1
713,550 + 15996 mRNA_7628 0.26 +0.4
713,602 - 15996 mRNA_7628 0.28 +0.5
714,202 - 15996 mRNA_7628 0.52 -0.4
714,335 - 15996 mRNA_7628 0.57 -0.1
714,368 + 15996 mRNA_7628 0.58 +0.5
715,056 + 15996 mRNA_7628 0.85 -0.7
715,064 - 15996 mRNA_7628 0.85 -0.4
715,071 + 15996 mRNA_7628 0.85 -1.6
715,507 - -0.3
715,509 - +2.3
715,514 - +0.4
716,244 + 15997 mRNA_7629 0.14 -0.1
716,245 + 15997 mRNA_7629 0.14 -0.4
716,253 + 15997 mRNA_7629 0.14 +0.5

Or see this region's nucleotide sequence