Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7644

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16011 and 16012 are separated by 363 nucleotides16012 and 16013 are separated by 697 nucleotides mRNA_7643: 16011 - K01469 OPLAH, OXP1, oplAH 5-oxoprolinase (ATP-hydrolysing), at 750,793 to 753,754 16011 mRNA_7644: 16012 - KOG0118 FOG RRM domain, at 754,118 to 756,054 16012 mRNA_7645: 16013 - K04794 PTH2 peptidyl-tRNA hydrolase, PTH2 family, at 756,752 to 757,515 16013

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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753,383 - 16011 mRNA_7643 0.87 +0.4
753,547 + -0.1
753,555 + +0.4
753,830 - +0.2
753,858 + -0.1
753,866 + +1.8
753,901 - -0.6
754,152 - +0.4
756,201 - -0.1
756,215 - +0.9
756,350 + -2.9
756,351 - +0.2
756,362 + +3.0
756,363 - -1.6
756,366 + -0.4
756,368 + +1.5
756,384 + -2.5
756,632 + +1.1

Or see this region's nucleotide sequence