Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7664

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16032 and 16033 are separated by 207 nucleotides mRNA_7664: 16032 - K07904 RAB11A Ras-related protein Rab-11A, at 794,964 to 796,238 16032 mRNA_7665: 16033 - K13119 FAM50, XAP5 protein FAM50, at 796,446 to 798,090 16033

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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793,968 - -1.4
793,977 - +0.3
793,994 + -1.2
794,005 + -2.6
794,006 - +0.0
794,008 - +1.4
794,009 + -1.5
794,034 + +0.9
794,035 + -0.6
794,037 + -0.5
794,053 + +1.2
794,058 + -0.9
794,071 - -1.7
794,074 + +2.2
794,077 - +2.2
794,078 + -0.9
794,081 + +0.4
794,082 + -0.6
794,093 - +1.2
794,096 - -1.2
794,098 - +0.5
794,104 + -0.1
794,105 - -0.5
794,115 + +1.2
794,117 + +1.8
794,122 - -1.7
794,122 - +0.5
794,123 - +2.4
794,127 - +0.0
794,130 + +0.1
794,134 + -0.2
794,135 - +0.1
794,136 - -0.5
794,138 + -0.2
794,141 + -0.2
794,152 - +0.2
794,155 + -0.3
794,161 + -0.9
794,162 - +0.6
794,164 - +0.4
794,164 - +2.1
794,165 - +1.7
794,167 - +0.5
794,168 + +0.1
794,174 + -2.1
794,175 + +1.9
794,177 - +0.4
794,177 + -0.2
794,179 - +1.0
794,180 - +0.3
794,180 - +0.5
794,182 + +0.2
794,184 + +0.8
794,185 + -0.0
794,185 - +0.3
794,186 + -0.6
794,187 - +1.6
794,187 - -2.4
794,202 - +0.4
794,203 + -1.6
794,203 + +0.6
794,203 - +2.0
794,204 + +0.7
794,206 + -0.8
794,209 + -0.1
794,210 - +0.5
794,223 - -0.3
794,227 - +1.2
794,227 + +2.1
794,229 + +1.0
794,230 - +1.0
794,233 + +0.2
794,233 - -0.4
794,236 - -1.7
794,237 + +0.2
794,238 + -0.2
794,240 - +1.3
794,245 - -0.8
794,245 - +1.0
794,248 + -1.7
794,248 - +1.2
794,252 - +1.6
794,253 - -0.2
794,259 - -0.8
794,259 + +0.9
794,261 + -0.5
794,262 + +2.1
794,265 + +1.9
794,267 - -0.0
794,278 - -0.2
794,281 - +2.9
794,283 + +0.8
794,292 + -1.2
794,372 + +1.5
794,396 + -0.8
794,418 + -1.0
794,422 + +0.3
794,427 + +0.2
794,447 + +1.0
794,453 - +1.0
794,459 + -0.3
794,496 - -0.5
794,517 - -0.2
794,521 - -0.5
794,525 + -0.1
794,529 + +1.1
794,542 - -0.1
794,555 + -0.2
794,556 + -0.7
794,558 + +0.2
794,561 - +0.3
794,563 + +1.5
794,568 + +0.9
794,575 + +1.0
794,576 - +0.5
794,578 - -0.2
794,596 + +1.2
794,597 + -1.2
794,620 + +0.3
794,624 - +0.7
794,689 + +0.7
794,697 - +0.2
794,697 - +1.3
794,703 - +0.7
794,703 + +0.4
794,715 - +0.2
794,722 - -0.4
794,727 - +0.0
794,732 - -1.8
794,737 - -1.2
794,747 + +1.6
794,751 - +1.5
794,761 + -1.2
794,766 + +2.5
794,769 + +1.0
794,771 + +1.8
794,888 + -0.4
794,891 + -0.8
794,959 - +1.3
795,574 - 16032 mRNA_7664 0.48 -0.0
796,342 + -0.1
796,352 - +3.7
796,358 - -0.1
796,359 + -1.3
796,359 - +2.9
796,367 - +0.2
796,376 + -0.5

Or see this region's nucleotide sequence