Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7676

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16043 and 16044 are separated by 898 nucleotides16044 and 16045 are separated by 495 nucleotides mRNA_7675: 16043 - Hypothetical Protein, at 816,849 to 817,556 16043 mRNA_7676: 16044 - Hypothetical Protein, at 818,455 to 819,544 16044 mRNA_7677: 16045 - Hypothetical Protein, at 820,040 to 821,034 16045

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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817,537 - -0.5
817,587 + +1.6
817,592 + +1.8
817,692 - +0.0
817,692 + +0.2
817,694 - +0.2
817,700 - -0.1
817,707 - +2.9
817,709 - +0.2
817,719 - +0.4
818,034 + +3.0
818,037 - +0.1
818,038 - +0.6
818,053 - -1.4
818,158 + +0.7
818,159 + +2.5
818,304 + +0.9
818,394 + -0.6
818,436 + +3.1
818,444 + +0.1
818,450 - -1.1
818,462 - -0.2
818,579 + 16044 mRNA_7676 0.11 -2.1
818,604 + 16044 mRNA_7676 0.14 +0.1
818,841 - 16044 mRNA_7676 0.35 +1.7
818,904 + 16044 mRNA_7676 0.41 +0.4
818,993 + 16044 mRNA_7676 0.49 -0.4
819,168 - 16044 mRNA_7676 0.65 +0.8
819,511 + +0.1
819,631 + +0.2
819,631 - +0.5
819,749 + +1.6
819,767 - +1.4
819,890 + -0.1
819,901 + +1.8
819,902 - -0.1
819,905 + +1.7
820,039 - -1.3
820,343 + 16045 mRNA_7677 0.30 +0.6
820,471 - 16045 mRNA_7677 0.43 -0.7
820,498 + 16045 mRNA_7677 0.46 -0.7

Or see this region's nucleotide sequence