Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7694

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16061 and 16062 are separated by 397 nucleotides16062 and 16063 are separated by 658 nucleotides mRNA_7693: 16061 - SUPERFAMILY--SSF57701, at 852,118 to 853,465 16061 mRNA_7694: 16062 - K12581 CNOT7_8, CAF1, POP2 CCR4-NOT transcription complex subunit 7/8, at 853,863 to 855,272 16062 mRNA_7695: 16063 - HMMPfam-Domain of unknown function (DUF1992)-PF09350, at 855,931 to 857,738 16063

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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852,891 - 16061 mRNA_7693 0.57 +0.9
852,947 - 16061 mRNA_7693 0.61 -0.7
853,132 - 16061 mRNA_7693 0.75 +1.3
853,132 - 16061 mRNA_7693 0.75 +0.4
853,281 + 16061 mRNA_7693 0.86 -2.1
853,546 + -1.4
853,554 - +1.1
853,567 + -0.7
853,679 + +2.3
853,707 - +1.3
853,710 + +3.4
854,114 - 16062 mRNA_7694 0.18 -0.6
855,455 - +0.5
855,592 - +0.0
855,621 - +1.9
855,624 + +2.3
855,627 + +1.0
855,629 + -0.8
855,629 - +1.2
855,632 + -1.5
855,740 - +1.4
855,769 + -0.1
855,775 + +0.6
856,266 + 16063 mRNA_7695 0.19 +0.6

Or see this region's nucleotide sequence