Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7699

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16066 and 16067 are separated by 190 nucleotides mRNA_7698: 16066 - Hypothetical Protein, at 864,285 to 865,332 16066 mRNA_7699: 16067 - K11681 SWR1 helicase SWR1, at 865,523 to 871,227 16067

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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864,794 - 16066 mRNA_7698 0.49 +0.6
864,982 + 16066 mRNA_7698 0.67 +0.9
865,147 - 16066 mRNA_7698 0.82 +0.6
865,147 - 16066 mRNA_7698 0.82 +1.5
865,306 + +1.2
871,306 + +0.1
871,313 - -0.3
871,316 + +1.4
871,317 + +0.5
871,324 + +0.2
871,325 + +0.1
871,335 + +0.1
871,339 - -0.5
871,339 + -1.4
871,339 + +0.4
871,438 - -0.0
871,443 + -0.9
871,451 - +1.7
871,471 - +0.2
871,472 - -0.4
871,475 + +1.9
871,475 + +1.9
871,479 + +0.5
871,548 - -1.3
871,947 + -2.1
871,975 + +2.1
871,978 + +0.4
872,059 - +0.5
872,089 - -1.0
872,099 + +0.1
872,102 - +0.8

Or see this region's nucleotide sequence