Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7774

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16141 and 16142 are separated by 194 nucleotides16142 and 16143 are separated by 863 nucleotides mRNA_7773: 16141 - K12857 SNRNP40, PRP8BP Prp8 binding protein, at 1,031,798 to 1,033,403 16141 mRNA_7774: 16142 - KOG1546 Metacaspase involved in regulation of apoptosis, at 1,033,598 to 1,035,909 16142 mRNA_7775: 16143 - K01673 cynT, can carbonic anhydrase, at 1,036,773 to 1,037,366 16143

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,032,853 + 16141 mRNA_7773 0.66 +0.0
1,033,127 + 16141 mRNA_7773 0.83 +1.2
1,033,257 + +0.8
1,033,394 - +2.4
1,033,543 + +2.0
1,033,560 + +0.3
1,033,702 - +3.2
1,033,711 + -1.8
1,033,714 - -0.3
1,033,984 - 16142 mRNA_7774 0.17 +1.1
1,033,997 + 16142 mRNA_7774 0.17 +0.7
1,034,430 - 16142 mRNA_7774 0.36 +0.8
1,034,431 - 16142 mRNA_7774 0.36 +0.2
1,034,461 + 16142 mRNA_7774 0.37 -1.0
1,034,613 + 16142 mRNA_7774 0.44 +0.0
1,034,842 - 16142 mRNA_7774 0.54 +1.5
1,035,318 + 16142 mRNA_7774 0.74 -0.0
1,035,496 + 16142 mRNA_7774 0.82 -0.1
1,035,595 + 16142 mRNA_7774 0.86 +0.5
1,035,625 + 16142 mRNA_7774 0.88 +0.8
1,036,197 + +3.6
1,036,213 - +1.0
1,036,214 - +0.2
1,036,215 - +0.1
1,036,217 - +1.0
1,036,233 + +1.6
1,036,243 - -0.2
1,036,245 + +2.0
1,036,349 - +1.1

Or see this region's nucleotide sequence