Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7779

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16146 and 16147 are separated by 747 nucleotides16147 and 16148 are separated by 687 nucleotides mRNA_7778: 16146 - Hypothetical Protein, at 1,041,189 to 1,043,169 16146 mRNA_7779: 16147 - K06655 PHO85 negative regulator of the PHO system, at 1,043,917 to 1,045,287 16147 mRNA_7780: 16148 - KOG0376 Serine-threonine phosphatase 2A, catalytic subunit, at 1,045,975 to 1,050,892 16148

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,043,092 - -0.7
1,043,103 + -0.1
1,043,264 - +2.1
1,043,362 - -0.3
1,043,376 - +2.4
1,043,386 + +0.5
1,043,387 - +0.6
1,043,396 + +0.3
1,043,401 - -1.6
1,043,405 + -0.4
1,043,406 + +0.5
1,043,434 + +1.3
1,043,582 + -0.0
1,043,600 + +0.2
1,043,602 - +0.5
1,043,616 + +0.6
1,043,750 + -0.9
1,043,878 - -1.2
1,045,249 - +1.2
1,045,454 + +2.8
1,045,464 + +0.2
1,045,469 + +1.8
1,045,475 + +0.2
1,045,619 - +0.6
1,045,626 - -0.9
1,045,630 - +1.2
1,045,637 + +2.2
1,045,787 + +0.7
1,046,021 + +0.9
1,046,078 - -0.3
1,046,170 + +0.7
1,046,204 - -0.5

Or see this region's nucleotide sequence