Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7849

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16217 and 16218 are separated by 990 nucleotides mRNA_7849: 16217 - KOG1529 Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase, at 1,213,713 to 1,217,281 16217 mRNA_7850: 16218 - KOG3291 Ribosomal protein S7, at 1,218,272 to 1,218,817 16218

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,213,048 + +1.5
1,213,279 - +1.5
1,213,339 + -0.0
1,213,488 + +1.1
1,213,505 - +1.8
1,213,560 - +0.2
1,213,574 - -0.0
1,213,589 + -1.1
1,213,617 + +0.4
1,213,737 + +0.6
1,213,751 + +1.2
1,213,909 + +2.0
1,213,964 - +2.2
1,214,009 - +1.0
1,214,108 - 16217 mRNA_7849 0.11 -0.6
1,214,150 - 16217 mRNA_7849 0.12 -0.2
1,214,328 - 16217 mRNA_7849 0.17 +0.5
1,214,342 + 16217 mRNA_7849 0.18 -0.9
1,214,353 + 16217 mRNA_7849 0.18 -3.6
1,214,357 + 16217 mRNA_7849 0.18 -0.2
1,214,375 - 16217 mRNA_7849 0.19 +0.8
1,214,401 + 16217 mRNA_7849 0.19 +0.7
1,214,473 - 16217 mRNA_7849 0.21 -0.6
1,214,474 - 16217 mRNA_7849 0.21 +1.7
1,214,483 + 16217 mRNA_7849 0.22 +0.5
1,214,485 + 16217 mRNA_7849 0.22 +0.7
1,214,551 + 16217 mRNA_7849 0.23 +0.3
1,214,604 + 16217 mRNA_7849 0.25 +0.5
1,214,643 - 16217 mRNA_7849 0.26 +0.1
1,214,744 + 16217 mRNA_7849 0.29 +2.1
1,214,825 - 16217 mRNA_7849 0.31 +0.4
1,214,911 - 16217 mRNA_7849 0.34 +1.8
1,215,212 + 16217 mRNA_7849 0.42 +0.1
1,215,296 - 16217 mRNA_7849 0.44 +2.6
1,215,302 + 16217 mRNA_7849 0.45 +0.4
1,215,475 - 16217 mRNA_7849 0.49 +0.1
1,215,647 + 16217 mRNA_7849 0.54 +1.1
1,215,663 - 16217 mRNA_7849 0.55 +0.5
1,215,927 + 16217 mRNA_7849 0.62 +3.3
1,215,988 - 16217 mRNA_7849 0.64 +0.7
1,216,165 - 16217 mRNA_7849 0.69 -1.6
1,216,521 + 16217 mRNA_7849 0.79 -0.7
1,216,969 + +0.4
1,217,484 + -0.5
1,217,529 - +0.3
1,217,690 + +0.3
1,217,761 + -0.1
1,218,014 - +0.5

Or see this region's nucleotide sequence