Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7868

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16235 and 16236 are separated by 92 nucleotides16236 and 16237 are separated by 188 nucleotides mRNA_7867: 16235 - Hypothetical Protein, at 1,262,057 to 1,262,662 16235 mRNA_7868: 16236 - Hypothetical Protein, at 1,262,755 to 1,264,857 16236 mRNA_7869: 16237 - KOG4366 Predicted thioesterase, at 1,265,046 to 1,266,017 16237

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,261,842 + +0.7
1,261,883 + +2.2
1,262,022 - -0.1
1,262,022 - +1.3
1,262,189 - 16235 mRNA_7867 0.22 -0.7
1,262,191 - 16235 mRNA_7867 0.22 +0.4
1,262,227 + 16235 mRNA_7867 0.28 -1.2
1,262,313 + 16235 mRNA_7867 0.42 +0.7
1,262,336 - 16235 mRNA_7867 0.46 -1.9
1,262,344 + 16235 mRNA_7867 0.47 +0.5
1,262,344 + 16235 mRNA_7867 0.47 -1.7
1,262,365 - 16235 mRNA_7867 0.51 +0.1
1,262,472 + 16235 mRNA_7867 0.68 +1.3
1,262,485 + 16235 mRNA_7867 0.71 -0.5
1,262,490 + 16235 mRNA_7867 0.71 -1.3
1,262,624 - -1.7
1,262,948 + +1.7
1,262,950 + +0.2
1,263,075 - 16236 mRNA_7868 0.15 +0.0
1,263,076 - 16236 mRNA_7868 0.15 -0.7
1,263,122 + 16236 mRNA_7868 0.17 +0.5
1,263,410 - 16236 mRNA_7868 0.31 -1.1
1,264,266 - 16236 mRNA_7868 0.72 -0.2
1,264,304 - 16236 mRNA_7868 0.74 +0.0
1,264,423 + 16236 mRNA_7868 0.79 -1.4
1,264,427 - 16236 mRNA_7868 0.80 -0.5
1,265,135 + +0.3
1,265,183 + 16237 mRNA_7869 0.14 -1.4
1,265,187 + 16237 mRNA_7869 0.15 +1.2

Or see this region's nucleotide sequence