Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7871

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16238 and 16239 are separated by 504 nucleotides16239 and 16240 are separated by 275 nucleotides mRNA_7870: 16238 - HMMPfam-Putative S-adenosyl-L-methionine-dependent methyltransferase-PF02636,SUPERFAMILY--SSF53335, at 1,266,402 to 1,268,243 16238 mRNA_7871: 16239 - HMMPfam-NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit-PF10785,HMMPfam-C-terminal of NADH-ubiquinone oxidoreductase 21 kDa subunit-PF12853, at 1,268,748 to 1,269,594 16239 mRNA_7872: 16240 - K11411 SIRT1, SIR2L1 NAD-dependent deacetylase sirtuin 1, at 1,269,870 to 1,272,263 16240

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,269,696 + +2.1
1,269,712 - -0.2
1,269,735 + -0.4
1,269,746 - -1.2
1,269,857 - +1.4
1,269,858 + -0.6
1,269,881 - -0.6
1,269,910 + +0.8
1,270,030 - +0.6
1,270,160 - 16240 mRNA_7872 0.12 +1.1
1,270,420 + 16240 mRNA_7872 0.23 -1.1
1,270,584 - 16240 mRNA_7872 0.30 +0.5

Or see this region's nucleotide sequence