Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7878

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16245 and 16246 are separated by 221 nucleotides16246 and 16247 are separated by 5 nucleotides16247 and 16248 are separated by 116 nucleotides mRNA_7877: 16245 - KOG1575 Voltage-gated shaker-like K+ channel, subunit beta/KCNAB, at 1,280,772 to 1,282,226 16245 mRNA_7878: 16246 - K14400 PCF11 pre-mRNA cleavage complex 2 protein Pcf11, at 1,282,448 to 1,285,814 16246 mRNA_7879: 16247 - Hypothetical Protein, at 1,285,820 to 1,286,086 16247 mRNA_7880: 16248 - K02940 RP-L9e, RPL9 large subunit ribosomal protein L9e, at 1,286,203 to 1,287,208 16248

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,281,763 + 16245 mRNA_7877 0.68 +0.7
1,281,899 + 16245 mRNA_7877 0.77 +0.6
1,282,044 - 16245 mRNA_7877 0.87 +0.6
1,282,083 - -1.3
1,282,178 + -0.5
1,282,187 + +3.6
1,282,220 + +0.2
1,282,239 - +2.0
1,282,487 + +2.1
1,282,784 + +0.0
1,285,436 - 16246 mRNA_7878 0.89 -0.3
1,285,566 + -1.3
1,285,569 + +0.2
1,285,585 - -0.2
1,285,589 + +1.9
1,285,592 + -0.5
1,285,593 + +0.9
1,285,733 - +0.7
1,285,745 - +1.3
1,285,746 + +3.8
1,285,746 + +1.1

Or see this region's nucleotide sequence