Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7913

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16280 and 16281 are separated by 176 nucleotides mRNA_7912: 16280 - K11434 PRMT1 type I protein arginine methyltransferase, at 3,147 to 4,682 16280 mRNA_7913: 16281 - K00234 SDHA, SDH1 succinate dehydrogenase (ubiquinone) flavoprotein subunit, at 4,859 to 7,568 16281

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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4,339 - 16280 mRNA_7912 0.78 +0.8
4,534 + +1.4
4,534 + -0.9
4,545 + -0.9
4,548 - +0.3
4,702 - +3.7
4,955 + +2.1
5,024 + -1.4
7,579 + -0.4
7,599 + -1.5
7,603 + -1.8
7,604 - +0.3
7,607 - +0.2
7,619 - -0.1
7,642 - +1.1
7,768 + -0.6
7,800 - +0.4
8,115 + +0.6
8,232 - -1.4
8,243 + +1.3
8,396 + +1.9
8,521 + +0.1
8,524 + +3.5

Or see this region's nucleotide sequence