Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7916

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16283 and 16284 are separated by 383 nucleotides16284 and 16285 are separated by 374 nucleotides mRNA_7915: 16283 - SUPERFAMILY--SSF51445, at 12,129 to 14,300 16283 mRNA_7916: 16284 - K08683 HSD17B10 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxy-2-methylbutyryl-CoA dehydrogenase, at 14,684 to 15,975 16284 mRNA_7917: 16285 - K18477 RMT2 type IV protein arginine methyltransferase, at 16,350 to 18,077 16285

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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13,950 - 16283 mRNA_7915 0.84 +0.4
13,953 + 16283 mRNA_7915 0.84 -1.6
14,353 - +1.3
14,370 - -0.0
14,410 + +0.5
14,532 - -0.3
14,689 + -2.5
14,696 - +1.2
14,836 - 16284 mRNA_7916 0.12 -2.2
14,843 + 16284 mRNA_7916 0.12 -0.3
15,322 - 16284 mRNA_7916 0.49 -0.6
15,555 + 16284 mRNA_7916 0.67 -1.4
15,576 + 16284 mRNA_7916 0.69 -0.5
15,823 - 16284 mRNA_7916 0.88 -0.4
15,852 + +0.7
16,151 - -0.0
16,153 - +0.7
16,182 + +2.5
16,184 - -0.1
16,282 - +0.3
16,291 - +0.5
16,291 - +1.2
16,303 + -1.4
16,307 - +2.9
16,309 + -0.7
16,310 - +0.2
16,314 + +0.5
16,317 + +1.0
16,325 - +1.6
16,344 - +0.2
16,360 - -0.4
16,446 - +1.0
16,663 - 16285 mRNA_7917 0.18 +0.4

Or see this region's nucleotide sequence