Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8001

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16368 and 16369 are separated by 233 nucleotides16369 and 16370 are separated by 509 nucleotides mRNA_8000: 16368 - K08991 MUS81 crossover junction endonuclease MUS81, at 180,086 to 183,760 16368 mRNA_8001: 16369 - K01092 E3.1.3.25, IMPA, suhB myo-inositol-1(or 4)-monophosphatase, at 183,994 to 185,593 16369 mRNA_8002: 16370 - KOG0132 RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains, at 186,103 to 188,392 16370

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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183,029 - 16368 mRNA_8000 0.80 +3.7
183,068 + 16368 mRNA_8000 0.81 +0.9
183,072 - 16368 mRNA_8000 0.81 +1.0
183,453 + +1.3
183,668 + +0.3
183,933 - +0.5
183,934 + +1.5
184,078 - +0.8
184,215 - 16369 mRNA_8001 0.14 +1.4
184,251 + 16369 mRNA_8001 0.16 +1.9
184,256 - 16369 mRNA_8001 0.16 -0.0
184,389 - 16369 mRNA_8001 0.25 +0.0
184,432 + 16369 mRNA_8001 0.27 +1.8
184,522 + 16369 mRNA_8001 0.33 +1.0
185,395 + 16369 mRNA_8001 0.88 -0.2
185,425 - 16369 mRNA_8001 0.89 +0.1
185,544 + +0.7
185,640 - -0.2
185,687 + -0.0
185,689 - +1.3
185,696 + -0.1
185,754 + -1.1
185,775 - -0.2
185,786 + +1.8
185,845 - +0.1
185,881 - +0.9
185,918 + -1.5
185,926 + +0.2
185,933 + +0.8
185,941 + +1.1
185,953 + +0.3
186,134 - +1.4
186,181 + -0.4
186,284 - -0.7
186,332 - 16370 mRNA_8002 0.10 +0.3
186,396 - 16370 mRNA_8002 0.13 -0.2
186,423 + 16370 mRNA_8002 0.14 -1.5

Or see this region's nucleotide sequence